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Tags: bash
Restricting User 'malawi' from Installing System-wide Programs and Verifying Permissions
chmod o-rx /home/jhuang
ls -ld /home/jhuang
cd /home/jhuang
groups malawi
sudo deluser malawi sudo
jhuang@hamm:~$ groups malawi
#malawi : malawi
jhuang@hamm:~$ groups jhuang
#jhuang : jhuang adm cdrom sudo dip plugdev lpadmin sambashare docker
Ensuring Full Permissions for User 'malawi' in Their Home Directory
#chmod -R u=rwx,go= /home/malawi
ls -ld /home/malawi
#drwxr-xr-x
sudo chown malawi:malawi /home/malawi
#sudo chmod 700 /home/malawi
#sudo chmod -R 700 /home/malawi
sudo chmod 755 /home/malawi
sudo chmod -R 755 /home/malawi
ls -ld /home/malawi
Protecting Other Users' Directories from Access by 'malawi'
sudo chmod o-rx /home/jhuang
sudo chmod o-rx /mnt/h1/jhuang
#for dir in /home/*; do
# if [ -d "$dir" ]; then
# sudo chmod o-rx "$dir"
# fi
#done
ls -ld /home/jhuang
Changing User Passwords
sudo passwd malawi
passwd
Changing User Passwords
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SeuratObject")
install.packages("Seurat")
6.
#(NOT GOOD) from 775 to o-rx
#sudo chmod o-rx /mnt/h1/jhuang
#sudo chmod -R o-rx /mnt/h1/jhuang
#sudo chmod o-rx /home/jhuang
#sudo chmod -R o-rx /home/jhuang
#from 775 to 750
sudo chmod 750 /mnt/h1/jhuang
sudo chmod -R 750 /mnt/h1/jhuang
sudo chmod 750 /home/jhuang
sudo chmod -R 750 /home/jhuang
#END
mkdir -p ~/miniconda3
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh
bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3
rm -rf ~/miniconda3/miniconda.sh
~/miniconda3/bin/conda init bash
conda create -n r -c bioconda r r-seurat
conda activate r
#> .libPaths()
#[1] "/home/malawi/miniconda3/envs/r/lib/R/library"
if (!requireNamespace("remotes", quietly = TRUE))
install.packages("remotes")
remotes::install_github("satijalab/seurat-data")
conda deactivate
conda activate r
R
library(Seurat)
library(SeuratData)
library(ggplot2)
library(patchwork)
library(dplyr)
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