Author: gene_x

Abstract: There are several alternative R packages and tools to perform motif enrichment analysis for RNA-binding proteins (RBPs), beyond PWMEnrich::motifEnrichment(). Here are the most notable ones: | Too

Author: gene_x

Abstract: Analysis of the RNA binding protein motifs for RNA Seq >TODOs_NEXTWEEK: how to use RBPmap results to enrich the significant RBPs for RNA-seq (3' UTRs?) and miRNAs? 🧬 1. RBPmap (Web +

Author: gene_x

Abstract: 1. Input data # name condition # ---------------------------------------------- # 0403_WaGa_wt parental_cells_1.fastq.gz # #050

Author: gene_x

Abstract: * paired-ends: Paired sequences from the two ends of a DNA fragment, mate-pairs and molecular-barcoding. * align-genus: Alignment to a reference genome within the same genus. * align-xgenus:

Author: gene_x

Abstract: 1. Targets Could you please assist me with processing RNA-seq data? The reference genome is CP059040. I aim to analyze the data using PCA, a Venn diagram, and KEGG and GO annotation enrichmen

Author: gene_x

Abstract: Cis-regulation vs Trans-regulation (in gene expression): Feature | Cis-regulation | Trans-regulation | :------------ | :------------ | :------------ | :------------ | | Location | Regulator is on th

Author: gene_x

Abstract: 摘要 鲍曼不动杆菌（Acinetobacter baumannii）是一种机会性病原体，常导致院内感染，并与高死亡率及发病率相关。 本研究对临床分离株HKAB-1（源自一名左心衰竭患者）进行了全面的表型分析，包括抗生素敏感性、生长动力学、生物膜形成及运动能力评估。 基于Illumina NovaSeq平台的全基因组测序及深入生物信息学分析发现，HKAB-1的表型抗生素

Author: gene_x

Abstract: 1. Download the raw data. see README_Downloads 2. Call variant calling using snippy ln -s ~/Tools/bacto/db/ .; ln -s ~/Tools/bacto/envs/ .; ln -s ~/Tools/bacto/local/ .;

Author: gene_x

Abstract: 1. Target 16sRNAseq Analyse - Legend Groups * (1) A1-A11 male aged 3d post-stroke * (2) B1-B16 female aged 3d post-stroke * (3) C1-C10 female aged BL FMT donor

Author: gene_x

Abstract: > HF samples (Enterobacter hormaechei strain HKEH-1 vs. CP095177, CP095178, CP095179) > Definition: If genome comparison verify the bacterium is Enterobacter hormaechei, we can name it as “Enterobact