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Author: gene_x
Abstract: 1. construct DESeqDataSet from Matrix library("AnnotationDbi") library("clusterProfiler") library("ReactomePA") library("org.Hs.eg.db") library(DESeq2) library(gplots) library(ggplot2)
Author: gene_x
Abstract: 1. Integration and analysis of multi-omics data: Explore the integration of different types of omics data (e.g., genomics, transcriptomics, proteomics) from public repositories to uncover novel biolog
Author: gene_x
Abstract: 1. generate_promter_sequences #!/usr/bin/env python3 #./1_generate_promoter_sequences.py gencode.v43.annotation.gtf.db import gffutils from pyfaidx import Fasta import argparse from Bio i
Author: gene_x
Abstract: >http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone Antibody: - CBP (SC-369) - H3K4me1 - H3K4me2 - H3K4me3 - H3K9ac - H3K9me1 - H3K9me3 - H3K27ac - H3K27me3 - H3K36me3 - H3K79me
Author: huang
Abstract: 1. Gonna 將會 Gonna 是 (be) going to 的非正式用法,表示「某人將會/將要做某事」的意思,常見於口語對話或是流行歌曲中,是一種比較輕鬆的表達方式,其句型為「主詞+be 動詞+gonna+原形動詞」。 A: Dylan, do you have any plans for Chinese New Year ? A:Dylan,你農曆年有沒有什麼計畫? B: Oh
Author: gene_x
Abstract: To find the closest peaks in the genome regions defined by a bed file, you can use a tool like BEDTools. BEDTools provides a function `closest` which allows you to find the closest feature in a second
Author: gene_x
Abstract: If you have genomic coordinates (like gene positions, SNP positions etc) in hg19 and want to convert them to hg38, you'd use what's known as a "liftover". The UCSC Genome Browser provides a tool speci
Author: gene_x
Abstract: import pprint import argparse import matplotlib.pyplot as plt import pandas as pd import gffutils import numpy as np #db = gffutils.create_db('gencode.v43.annotation.gtf', dbfn='gencode.v43.an
Author: gene_x
Abstract: To implement the clustering of promoter types based on motif frequency and distribution using Python, you can follow these steps: 1. Import the required libraries: import pandas as pd import num
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