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MtlD基因: Exploring the Role of Mannitol-1-Phosphate Dehydrogenase in Microbial Metabolism and Survival

Author: gene_x

Abstract: MtlD refers to a gene that encodes for the enzyme mannitol-1-phosphate dehydrogenase. This enzyme is involved in the metabolism of mannitol, a sugar alcohol that serves as a source of carbon and energ

The p53-R175H Mutation (p53-R175H突变): Implications for Cancer Development and Emerging Therapeutic Strategies

Author: gene_x

Abstract: The p53-R175H mutation refers to a specific change in the TP53 gene, which encodes for the p53 protein. The p53 protein is a crucial tumor suppressor that plays a significant role in preventing the de

Enteroviruses (肠道病毒): Classification, Transmission, and Prevention of a Diverse Group of Viral Infections

Author: gene_x

Abstract: Enteroviruses are a group of viruses that belong to the Picornaviridae family. They are small, single-stranded RNA viruses that can cause a wide range of illnesses in humans and animals. There are ove

Creating a Simple Snake Game (贪吃蛇) in Python Using Pygame

Author: gene_x

Abstract: 贪吃蛇是一款经典的游戏,可以用Python的Pygame库来实现。以下是一个简单的贪吃蛇游戏实现: - 首先,确保已经安装了Python和Pygame库。如果没有安装Pygame,请使用以下命令进行安装: pip install pygame - 创建一个新的Python文件(例如:snake.py),然后复制以下代码到文件中: import sys im

Running PICRUSt2: A Step-by-Step Guide to Predicting Microbial Community Functional Profiles

Author: gene_x

Abstract: PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a bioinformatics tool used to predict the functional content of a microbial community based on marker gen

Retrieving KEGG Genes Using Bioservices in Python

Author: gene_x

Abstract: Biopython does not have built-in support for KEGG database. However, you can use the bioservices library to retrieve and interact with KEGG data. To fetch all available genes in the KEGG database, you

GAMOLA2 pre- and postprocessing

Author: gene_x

Abstract: #-- view process.py -- with open("MT880872_CDS.fasta", "r") as f: for line in f: if line.startswith(">"): header_words = line.strip().split("locus_tag=")

47 popular functions in Biopython

Author: gene_x

Abstract: Here are 47 popular functions in Biopython: - Seq: Represents a biological sequence, such as DNA or protein. - SeqRecord: Represents a sequence with metadata, including ID and description. - SeqIO: H

Preparing custom gtf and bed files for nextflow RNA-seq pipeline

Author: gene_x

Abstract: -- 0, generate the ref.gtf and ref.bed from GenBank file: HD21-2_new.gtf and HD21-2_new.bed -- #[PREPARE gtf from gff] https://github.com/gpertea/gffread/issues/3 #DEL gb2

Downloading DNA and Protein Sequences from NCBI Using Biopython and Taxonomy ID

Author: gene_x

Abstract: Biopython is a useful library for working with biological data in Python. You can use it to download sequences from GenBank by specifying a taxonomy ID. Here's a code example to download sequences usi


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