Author: gene_x

Abstract: 1. prepare input reads and samplesheet ln -s ./F23A430001245_SEPiovzP/soapnuke/clean/EX_15_min_A/EX_15_min_A_1.fq.gz . ln -s ./F23A430001245_SEPiovzP/soapnuke/clean/EX_15_min_A/EX_15_

Author: gene_x

Abstract: >TODO: after annotation check if the app-gene has been truncated in 5179-R1. The 5179 generates 180 kDa and 220 kDa (isoforms) while 5179-R1 generated only a 140 kDa protein. # See the paper: Ind

Author: gene_x

Abstract: Cell free circulating DNA (cfDNA) refers to DNA fragments present outside of cells in body fluids such as plasma, urine, and cerebrospinal fluid (CSF). CfDNA was first identified in 1948 from plasma o

Author: gene_x

Abstract: 0. prapare the input sequencing data NGS.id Sample.name ONT_barcode jk3332 5179R1 Native Barcode NB01 jk3333 1585 Native Barcode NB02 jk3334 1585V Native Barco

Author: gene_x

Abstract: Random Forest is a machine learning model that falls under the category of ensemble learning methods. It is particularly known for classification and regression tasks but can also be used for other ma

Author: gene_x

Abstract: The terms "EV" and "outer membrane vesicle (OMV)" are related to biological structures, particularly in the context of bacterial or cell biology. They refer to different types of vesicles or membrane-

Author: gene_x

Abstract: #Questions about V3–V4 primers for 16S rRNA amplicon sequencing, and calculating overlap https://forum.qiime2.org/t/questions-about-v3-v4-primers-for-16s-rrna-amplicon-sequencing-and-calculati

Author: gene_x

Abstract: > https://www.virologie.uni-wuerzburg.de/virologie/ags-virologie/ag-doelken/research/ 1. Principle of 4sU-tagging: 4-thiouridine (4sU) is added to cell culture medium to start metabolic labelling of

Author: gene_x

Abstract: A "lytic nuclear DNA virus infection" refers to a type of viral infection where a DNA virus enters a host cell, replicates in the nucleus, and eventually causes the lysis (destruction) of the cell. He

Author: gene_x

Abstract: DNA损伤特异性泛素化是指在DNA损伤响应中，泛素分子特异性地附加到蛋白质上的细胞过程。这一过程是DNA损伤响应（DDR）机制的重要组成部分，DDR是一种复杂的细胞网络，负责检测和修复受损DNA，维护基因组稳定性，防止突变。以下是更详细的概述： - 泛素化：这是一种翻译后修饰过程，其中一个名为泛素的小蛋白质共价地附加到目标蛋白质上的赖氨酸残基上。这个过程由一系列酶进行：E1（泛素激活酶）