There are 332 articles for you to read.

Utilizing Random Forest to Differentiate Bacterial vs. Viral Infections via Host Gene Expression Signatures

Author: gene_x

Abstract: Random Forest is a machine learning model that falls under the category of ensemble learning methods. It is particularly known for classification and regression tasks but can also be used for other ma

EV vs OMV

Author: gene_x

Abstract: The terms "EV" and "outer membrane vesicle (OMV)" are related to biological structures, particularly in the context of bacterial or cell biology. They refer to different types of vesicles or membrane-

Which hypervariable regions do the amplicon sequences belong to: V3–V4 or V4–V5?

Author: gene_x

Abstract: #Questions about V3–V4 primers for 16S rRNA amplicon sequencing, and calculating overlap https://forum.qiime2.org/t/questions-about-v3-v4-primers-for-16s-rrna-amplicon-sequencing-and-calculati

4sU-tagging, ribosome profiling and ATAC-Seq

Author: gene_x

Abstract: > https://www.virologie.uni-wuerzburg.de/virologie/ags-virologie/ag-doelken/research/ 1. Principle of 4sU-tagging: 4-thiouridine (4sU) is added to cell culture medium to start metabolic labelling of

Early viral and host transcriptome atlas of lytic nuclear DNA virus infection

Author: gene_x

Abstract: A "lytic nuclear DNA virus infection" refers to a type of viral infection where a DNA virus enters a host cell, replicates in the nucleus, and eventually causes the lysis (destruction) of the cell. He

DNA-damage specific ubiquitination

Author: gene_x

Abstract: DNA损伤特异性泛素化是指在DNA损伤响应中,泛素分子特异性地附加到蛋白质上的细胞过程。这一过程是DNA损伤响应(DDR)机制的重要组成部分,DDR是一种复杂的细胞网络,负责检测和修复受损DNA,维护基因组稳定性,防止突变。以下是更详细的概述: - 泛素化:这是一种翻译后修饰过程,其中一个名为泛素的小蛋白质共价地附加到目标蛋白质上的赖氨酸残基上。这个过程由一系列酶进行:E1(泛素激活酶)

merging of hg38 counts of two tables and cbind virus counts

Author: gene_x

Abstract: #-- merge the hg38 counts of 38 samples and the hg38 counts of LT_K331A -- # Load necessary libraries library(dplyr) # Read the first table first_table <- read.csv("merge

RNA-seq data analysis of Yersinia on GRCh38

Author: gene_x

Abstract: YopM is a systematic antagonist of YopP in suppressing inflammatory gene expression in Yersinia-infected human macrophages 0. goal # 0th heatmap see manuscript: The # 1.th heatmap

Setup conda environments

Author: gene_x

Abstract: 1. install rnaseq on sage #-- version 2 -- conda install -c conda-forge mamba mamba create -n rnaseq -c conda-forge -c bioconda -c defaults python fastqc trim-galore star hisa

Workstation Configuration

Author: gene_x

Abstract: 1. 1485 * RECT Workstation WS-2290C 1 Stück 15.150,00 - 2x Intel Xeon Gold 6338 Processor (2,00 GHz, 32 Cores, 64 Threads, 48 MB Cache);


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