Author: gene_x

Abstract: kraken2 --db Minikraken2_v2 input_sequences.fasta --output output.kraken2 kraken2 --db=/home/jhuang/Tools/k2_standard_20230605 --output=A10_output.txt --report=A10_report.txt --paired ./results_ATCC1

Author: gene_x

Abstract: 1. input data #Deciphering Evolutionary Trajectories in Acinetobacter baumannii: A Comparative Study of Isolates ATCC 19606, AYE, and ATCC 17978 #PRJNA1041744

Author: gene_x

Abstract: 1. download viral database cp download_db.py down_db.py.backup sed -i -e 's/39733/1396/g' download_db.py #NOTE the download_db.py cannot run alone, rather than via "vrap.py -u

Author: gene_x

Abstract: 摘要 自现代转座子插入测序（TIS）方法引入以来已有10年的时间了。这些方法结合了全基因组转座子突变和高通量测序，用于估计细菌基因组中每个遗传组分的适应性贡献或必需性。2009年，发布了四种TIS变体：转座子测序（Tn-Seq）、转座子定向插入位点测序（TraDIS）、插入测序（INSeq）和高通量插入跟踪深度测序（HITS）。此后，TIS已成为分子微生物学家的重要工具之一，它是少数直接将表

Author: gene_x

Abstract: > https://fonseca.lab.mcgill.ca/resources/20220810_ATAC_Analysis_Demo/guide.html#peaks [](/static/peaks_

Author: gene_x

Abstract: Below are example commands for each step of scaffolding and finishing an assembly with a reference genome. Please note that the specific parameters may need to be adjusted based on your data and compu

Author: gene_x

Abstract: Plasmid design is a critical aspect of molecular biology and genetic engineering, where a circular DNA molecule (plasmid) is engineered to replicate within a host organism independently. Here's an ove

Author: gene_x

Abstract: 1. Define "promoter types" by examining the frequency and distribution of the 'GRGGC' motif on both + and - strands within the promoter region, and categorize promoters based on the identified "promot

Author: gene_x

Abstract: For a bacterial genome such as Acinetobacter baumannii, the pipeline would be slightly different than the one used for the human due to the simpler genome structure, the absence of introns, and the di

Author: gene_x

Abstract: Based on the provided image of the MCPyV (Merkel cell polyomavirus) genome, it appears that ALTO is positioned between the LT (Large T antigen) and sT (small T antigen) regions. However, it's not enti