Author: gene_x

Abstract: The study revolves around the evaluation of the proximity of integration sites to peaks in the human genome, using a permutation-based approach. It involves three primary steps: 1. Observed Data: We

Author: gene_x

Abstract: [](/static/images/error_bar.png "error_bar") How to run the software package PiCRUST2 (Phylogenetic Investigation of Communities by Reconstructio

Author: gene_x

Abstract: Install and configure that the packages for Docker (docker-ce, docker-ce-cli, and containerd.io): 1. Update your system's package information: sudo apt-get update 2. Uninstall any old versions of

Author: gene_x

Abstract: [](/static/venn_diagrams/Venn_Diagram_NHDF_vs_HEK293_vs

Author: gene_x

Abstract: 详细解释：梅尔克细胞多瘤病毒（Merkel cell polyomavirus，MCPyV）的小肿瘤抗原（small tumor antigen，sT）是该病毒的一个重要组分，通过干扰类型I干扰素（type I interferon）信号传导来促进免疫逃逸。 类型I干扰素是免疫系统中的一类重要信号分子，对抗病毒感染和肿瘤发展起着关键作用。然而，MCPyV的小肿瘤抗原通过干扰类型I干扰素信号的正常

Author: gene_x

Abstract: #!/usr/bin/env python3 #python3 plot_peaks.py peaks.bed /home/jhuang/REFs/gencode.v43.annotation.gtf.db /ref/Homo_sapiens/UCSC/hg38/Sequence/WholeGenomeFasta/genome.fa #~/Tools/csv2xls-0.4/csv_to_x

Author: gene_x

Abstract: For SNP visualization in Python, we can consider using the following packages: * Matplotlib: Matplotlib is a popular plotting library in Python that can be used to create various types of visualizati

Author: gene_x

Abstract: 1. construct DESeqDataSet from Matrix library("AnnotationDbi") library("clusterProfiler") library("ReactomePA") library("org.Hs.eg.db") library(DESeq2) library(gplots) library(ggplot2)

Author: gene_x

Abstract: 1. Integration and analysis of multi-omics data: Explore the integration of different types of omics data (e.g., genomics, transcriptomics, proteomics) from public repositories to uncover novel biolog

Author: gene_x

Abstract: 1. generate_promter_sequences #!/usr/bin/env python3 #./1_generate_promoter_sequences.py gencode.v43.annotation.gtf.db import gffutils from pyfaidx import Fasta import argparse from Bio i