There are 332 articles for you to read.

Prepare virus GTF for nextflow run

Author: gene_x

Abstract: 1. Prepare GTF for non-model virus * The gffread command you're using is designed to convert GFF format files to GTF format, but it doesn't necessarily preserve all the attribute information. The

RNAseq processing for organoids

Author: gene_x

Abstract: 1. install conda environment #conda config --set auto_activate_base false conda create --name rnaseq python=3.7 #NOTE: mamba 确实快多了,以后都用 mamba❕ #install packages

人体类器官(Organoids)

Author: gene_x

Abstract: 类器官(Organoids)是模拟真实器官或组织的结构和功能的三维(3D)细胞培养。它们来源于干细胞,这种细胞具有自我更新和分化为各种细胞类型的能力。在实验室中,可以使用专门的技术和生长条件培养类器官,促使干细胞发育成特定器官的细胞并形成类似目标器官的复杂微型结构。 类器官在研究中具有重要作用,因为与传统的二维(2D)细胞培养相比,它们更准确地代表了人体器官。它们在各个领域具有广泛的应用,包括:

X-ray holographic microscopy

Author: gene_x

Abstract: X-ray holographic microscopy is a technique used to produce high-resolution, three-dimensional images of microscopic objects. The technique is based on the principles of holography, where the phase an

RNAseq running with umi_tools

Author: gene_x

Abstract: 1. install conda environment #conda config --set auto_activate_base false conda create --name rnaseq python=3.7 #NOTE: mamba 确实快多了,以后都用 mamba❕ #install packages

Epidome processing

Author: gene_x

Abstract: 1. Raw_Data #Here are some more information on the two sample collections for epidome sequencing: 9+10+33=52 #Samples 7N-15N are nose swabs of 9 individual patients, and 16-20F/N are

Evaluating the Proximity of Genomic Features (=integration sites) to Peaks Using a Permutation Test genomic features

Author: gene_x

Abstract: The study revolves around the evaluation of the proximity of integration sites to peaks in the human genome, using a permutation-based approach. It involves three primary steps: 1. Observed Data: We

PiCRUST2 Pipeline for Functional Prediction and Pathway Analysis in Metagenomics

Author: gene_x

Abstract: [![error_bar](/static/images/error_bar.png "error_bar")](/static/images/error_bar.png "error_bar") How to run the software package PiCRUST2 (Phylogenetic Investigation of Communities by Reconstructio

Install and configure Docker for 'nextflow run nf-core/rnaseq'

Author: gene_x

Abstract: Install and configure that the packages for Docker (docker-ce, docker-ce-cli, and containerd.io): 1. Update your system's package information: sudo apt-get update 2. Uninstall any old versions of

Draw Venn Diagrams using matplotlib

Author: gene_x

Abstract: [![Venn_Diagram_NHDF_vs_HEK293_vs_PFSK-1](/static/venn_diagrams/Venn_Diagram_NHDF_vs_HEK293_vs_PFSK-1.png "Venn_Diagram_NHDF_vs_HEK293_vs_PFSK-1")](/static/venn_diagrams/Venn_Diagram_NHDF_vs_HEK293_vs


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