There are 248 articles for you to read.

RNA-seq data analysis on S. epidermidis 1585

Author: gene_x

Abstract: 1. prepare input reads and samplesheet ln -s ./F23A430001245_SEPiovzP/soapnuke/clean/EX_15_min_A/EX_15_min_A_1.fq.gz . ln -s ./F23A430001245_SEPiovzP/soapnuke/clean/EX_15_min_A/EX_15_

Which assemblies of S.epidermidis_1585_5179_HD05 have been submitted to NCBI?

Author: gene_x

Abstract: >TODO: after annotation check if the app-gene has been truncated in 5179-R1. The 5179 generates 180 kDa and 220 kDa (isoforms) while 5179-R1 generated only a 140 kDa protein. # See the paper: Ind

cfDNA Sequencing: Technological Approaches and Bioinformatic Issues

Author: gene_x

Abstract: Cell free circulating DNA (cfDNA) refers to DNA fragments present outside of cells in body fluids such as plasma, urine, and cerebrospinal fluid (CSF). CfDNA was first identified in 1948 from plasma o

洛那法尼(lonafarnib):从抗癌症到抗病毒的多功能药物

Author: huang

Abstract: 0. A Promising Farnesyltransferase Inhibitor for Cancer and Progeria Treatment Lonafarnib is an oral farnesyltransferase inhibitor (FTI) drug. Farnesyltransferase is an enzyme involved in the pos

Unicycler vs. Trycycler

Author: gene_x

Abstract: 0. prapare the input sequencing data NGS.id Sample.name ONT_barcode jk3332 5179R1 Native Barcode NB01 jk3333 1585 Native Barcode NB02 jk3334 1585V Native Barco

Utilizing Random Forest to Differentiate Bacterial vs. Viral Infections via Host Gene Expression Signatures

Author: gene_x

Abstract: Random Forest is a machine learning model that falls under the category of ensemble learning methods. It is particularly known for classification and regression tasks but can also be used for other ma

EV vs OMV

Author: gene_x

Abstract: The terms "EV" and "outer membrane vesicle (OMV)" are related to biological structures, particularly in the context of bacterial or cell biology. They refer to different types of vesicles or membrane-

Which hypervariable regions do the amplicon sequences belong to: V3–V4 or V4–V5?

Author: gene_x

Abstract: #Questions about V3–V4 primers for 16S rRNA amplicon sequencing, and calculating overlap https://forum.qiime2.org/t/questions-about-v3-v4-primers-for-16s-rrna-amplicon-sequencing-and-calculati

4sU-tagging, ribosome profiling and ATAC-Seq

Author: gene_x

Abstract: > https://www.virologie.uni-wuerzburg.de/virologie/ags-virologie/ag-doelken/research/ 1. Principle of 4sU-tagging: 4-thiouridine (4sU) is added to cell culture medium to start metabolic labelling of

Early viral and host transcriptome atlas of lytic nuclear DNA virus infection

Author: gene_x

Abstract: A "lytic nuclear DNA virus infection" refers to a type of viral infection where a DNA virus enters a host cell, replicates in the nucleus, and eventually causes the lysis (destruction) of the cell. He


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